PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.096680.3
Common NameCsa_4G003720, LOC101212435
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 232aa    MW: 26457.9 Da    PI: 4.177
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.096680.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30966359
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                    D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d+++++itY+++Hnh+
  Cucsa.096680.3  9 DFWSWRKYGQKPIKGSPYPRGYYRCSTTkGCSAKKQVERCKTDGSMFIITYTSSHNHP 66
                    99***********************9988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-31368IPR003657WRKY domain
SuperFamilySSF1182903.53E-26568IPR003657WRKY domain
SMARTSM007741.0E-35767IPR003657WRKY domain
PfamPF031061.5E-25966IPR003657WRKY domain
PROSITE profilePS5081130.561968IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MKNEGPPPDF WSWRKYGQKP IKGSPYPRGY YRCSTTKGCS AKKQVERCKT DGSMFIITYT  60
SSHNHPGPNI STLNLDQNYQ QEIDPPQPLD RDDDEDHHDL VPNQAQDHDN NSNNDDKNSI  120
IISQSTEEEE VEEVEEEEED ELLLVEDEEK KGIEKIKDEC LDQEPIIISS SSNSSSCCDE  180
LMIIKTKKSE IENHDHFFDE LEELPIPPPF SSTLMRSSYS FDEIRISAAP S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-169651974Probable WRKY transcription factor 4
2lex_A2e-169651974Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152355.11e-170PREDICTED: probable WRKY transcription factor 27
TrEMBLA0A0A0KVB91e-170A0A0A0KVB9_CUCSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-31WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]